Human Pathogens
Listed below are the currently available frequency sets for human pathogens found in the free pdf book, available here.
A
Absidia ramosa, see Lichtheimia hongkongensis.
Acanthamoeba castellani
Acetoanaerobium stricklandii ••• Also known as Clostridium stricklandii.
Achromobacter xylosoxidans
Acinetobacter baumanii
Acinetobacter junii
Acinetobacter lwoffii
Acremonium chrysogenum ••• Also known as Cephalosporium acremonium or Cephalosporium chrysogenum. Fungal organism.
Actinobacillus actinomycetemcomitans, see Aggregatibacter actinomycetemcomitans.
Actinomyces bovis
Actinomyces graevenitzii
Actinomyces israelii
Actinomyces naeslundii
Actinomyces viscosus
Adenovirus type 4 (human)
Adenovirus type 5 (human)
Adenovirus type 7 (human)
Adenovirus type 11 (human)
Adenovirus type 12 (human)
Adenovirus type 14 (human)
Adenovirus type 21 (human)
Adenovirus type 36 (human)
Adenovirus type 37 (human)
Adenovirus type 40 (human)
Adenovirus type 41 (human)
Aerococcus urinae
Aeromonas caviae
Aeromonas hydrophila
Aeromonas veronii
Aggregatibacter actinomycetemcomitans ••• Previously known as Actinobacillus actinomycetemcomitans.
Aggregatibacter aphrophilus
Alcaligenes faecalis
Alternaria alternata ••• Fungal organism.
Anaerococcus prevotii ••• Formerly known as Peptostreptococcus prevotii.
Anaplasma phagocytophilum
Ancylostoma caninum ••• Common name: dog hookworm.
Ancylostoma duodenale & Necator americanus ••• Two closely-related species of human hookworm.
Angiostrongylus general ••• Includes Angiostrongylus cantonensis & Angiostrongylus costaricensis (respective common names: rat lungworm & American rat lungworm).
Anisakis simplex ••• Common name: herring worm.
Arthroderma obtusum & Arthroderma gypseum ••• Fungal organisms. Alternate or old names for A. obtusum: Microsporum nanum, Microsporum gypseum variant nanum, Nannizzia obtusa, Nannizzia nana. Alternate or old names for A. gypseum: Microsporum gypseum, Nannizzia gypsea.
Ascaris suum (also known as Ascaris lumbricoides) ••• Common name: pig roundworm.
Aspergillus flavus ••• Fungal organism.
Aspergillus fumigatus ••• Fungal organism.
Aspergillus lentulus ••• Fungal organism.
Aspergillus nidulans ••• Fungal organism.
Aspergillus niger ••• Fungal organism.
Aspergillus parasiticus ••• Fungal organism.
Astrovirus human
ATCV-1 virus ••• Full name: Acantocystis turfacea Chlorella virus 1.
Atopobium vaginae
Avian erythroblastosis virus ••• Contains erb oncogene(s).
Avian myelocytomatosis virus ••• Contains myc oncogene.
B
Babesia bovis
Babesia divergens
Babesia duncani
Babesia microti
Bacillus anthracis
Bacillus cereus
Bacillus licheniformis
Bacteroides buccalis, see Prevotella buccalis.
Bacteroides caccae
Bacteroides distasonis
Bacteroides fragilis
Bacteroides ovatus
Bacteroides vulgatus
Barmah forest virus
Bartonella bacilliformis
Bartonella birtlesii
Bartonella bovis
Bartonella clarridgeiae
Bartonella elizabethae
Bartonella grahamii
Bartonella henselae
Bartonella koehlerae
Bartonella quintana
Bartonella rochalimae
Bartonella taylorii
Bartonella tribocorum
Bartonella vinsonii
Bartonella washoensis
Baylisascaris procyonis ••• Common name: raccoon roundworm.
Bilophila wadsworthia
BK virus
Blastocystis species subtypes 1-4 ••• These are the more common Blastocystis subtypes that infect humans, with subtypes 1-3 being the most common. The former name of the organism was loosely called “Blastocystis hominis”, which has now been officially retired by the scientific community due to frequent cross-species zoonotic passage between animals and humans.
Blastomyces dermatitidis ••• Fungal organism.
Bordetella pertussis & parapertussis
Borna disease virus
Borrelia afzelii ••• Also known as Borreliella afzelii (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia bavariensis ••• Previously known as Borrelia garinii subspecies bavariensis. Also known as Borreliella bavariensis (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia bissettii ••• Also known as Borreliella bissettii (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia burgdorferi ••• Also known as Borreliella burgdorferi (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia californiensis ••• Also known as Borreliella californiensis (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia coriaceae ••• This Borrelia species is associated with relapsing fever.
Borrelia duttonii ••• This Borrelia species is associated with relapsing fever.
Borrelia garinii ••• Also known as Borreliella garinii (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia hermsii ••• This Borrelia species is associated with relapsing fever.
Borrelia hispanica ••• This Borrelia species is associated with relapsing fever.
Borrelia mayonii ••• Also known as Borreliella mayonii (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia miyamotoi ••• This Borrelia species is associated with relapsing fever.
Borrelia parkeri ••• This Borrelia species is associated with relapsing fever.
Borrelia persica ••• This Borrelia species is associated with relapsing fever.
Borrelia recurrentis ••• This Borrelia species is associated with relapsing fever.
Borrelia spielmanii ••• Also known as Borreliella spielmanii (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia turicatae ••• This Borrelia species is associated with relapsing fever.
Borrelia valaisiana ••• Also known as Borreliella valaisiana (synonym). This Borrelia species is associated with lyme type of disease.
Borrelia vincentii, see Treponema vincentii.
Bovine leukemia virus
Brachyspira pilosicoli
Brucella abortus
Brucella canis
Brucella melitensis
Brucella suis
Brugia malayi ••• A filarial roundworm.
Brugia timori ••• A filarial roundworm.
Burkholderia cepacia & cenocepacia ••• Burkholderia cenocepacia is formerly named Burkholderia cepacia genomovar III.
Burkholderia mallei ••• Formerly known as Pseudomonas mallei.
Burkholderia multivorans
Burkholderia pseudomallei ••• Formerly known as Pseudomonas pseudomallei.
C
Campylobacter fetus
Campylobacter gracilis
Campylobacter jejuni
Campylobacter rectus
Campylobacter showae
Campylobacter upsaliensis
Candida albicans ••• Fungal organism.
Candida auris ••• Fungal organism.
Candida famata, see Debaromyces hansenii.
Candida glabrata ••• Fungal organism.
Candida guilliermondi, see Meyerozyma guilliermondi. Fungal organism.
Candida krusei ••• Also known as Pichia kudriavzevii. Fungal organism.
Candida lusitaniae, see Clavispora lusitaniae.
Candida parapsilosis ••• Fungal organism.
Candida sake ••• Fungal organism.
Candida tropicalis ••• Fungal organism.
Capnocytophaga ochracea
Chickenpox virus, see Human herpesvirus 3.
Chikungunya virus
Chlamydia muridarum
Chlamydia trachomatis
Chlamydophila caviae
Chlamydophila pecorum
Chlamydophila pneumoniae ••• Also known as Chlamydia pneumoniae.
Chlamydophila psittaci
Citrobacter amalonaticus
Citrobacter braakii
Citrobacter freundii
Citrobacter koseri
Cladosporium anthropophilum ••• Fungal organism.
Cladosporium cladosporioides ••• Fungal organism.
Cladosporium sphaerospermum ••• Fungal organism.
Clavispora lusitaniae ••• Also known as Candida lusitaniae. Fungal organism.
Clonorchis sinensis ••• Common name: Chinese liver fluke.
Clostridium bolteae
Clostridium botulinum
Clostridium difficile
Clostridium histolyticum, see Hathewaya histolytica.
Clostridium perfringens
Clostridium ramosum
Clostridium scindens
Clostridium sporogenes
Clostridium tetani
Coccidioides general ••• Fungal organism. Set includes items from two species, Coccidioides immitis and Coccidioides posadasii.
Colorado tick fever virus
Comamonas kerstersii
Comamonas testosteroni
Coronavirus human ••• “Common cold” variety of coronavirus. SARS or MERS coronaviruses not included.
Coronavirus MERS ••• MERS = Middle Eastern Respiratory Syndrome.
Coronavirus SARS-CoV-2 ••• Associated with covid-19.
Corynebacterium diphtheriae
Corynebacterium equi, see Rhodococcus equi.
Corynebacterium jeikeium
Corynebacterium pseudodiphtheriticum
Corynebacterium tuberculostearicum
Corynebacterium urealyticum
Corynebacterium vaginalis, see Gardnerella vaginalis.
Coxiella burnetti
Coxsackievirus A, types 1-12
Coxsackievirus A, types 13-24
Coxsackievirus B, types 1-6
Cronobacter sakazakii ••• Formerly known as Enterobacter sakazakii.
Cryptococcus gatti ••• Alternate names: Cryptococcus bacillisporus, Filobasidiella bacillispora. Fungal organism.
Cryptococcus neoformans ••• Fungal organism.
Cryptosporidium hominis
Cryptosporidium parvum
Cutavirus ••• Also known as Primate protovirus 1.
Cutibacterium acnes, see Propionibacterium acnes.
Cyclospora cayetanensis
Cytomegalovirus, see Human herpesvirus 5.
D
Debaromyces hansenii ••• Alternate or older names: Candida famata, Pichia hansenii, Torulaspora hansenii, Debaromyces tyrocola var. hansenii. Fungal organism.
Demodex brevis ••• Eyelash / small hair mite.
Demodex folliculorum ••• Eyelash / small hair mite.
Dengue virus ••• Types 1-4.
Dental pathogens common ••• See Streptococcus mutans, Treponema denticola, Porphyromonas gingivalis, and Fusobacterium nucleatum.
Dermatophagoides farinae ••• Common name: American house dust mite.
Dermatophagoides pteronyssinus ••• Common name: European house dust mite.
Desulfovibrio desulfuricans
Desulfovibrio piger
Desulfovibrio vulgaris
Dialister invisus
Dicrocoelium dendriticum & chinensis ••• Common names: Lancet liver fluke, small liver fluke.
Dictyostelium discoideum
Dientamoeba fragilis
Dipetalonema gracile
Diphyllobothrium latum & nihonkaiense ••• Common name: broad tapeworm.
Dipylidium caninum ••• Common names: Flea tapeworm, dog tapeworm, cat tapeworm.
Dirofilaria immitis ••• Common name: dog heartworm.
Dirofilaria repens ••• A filarial nematode parasite.
E
Eastern equine encephalitis virus ••• Includes items from various isolates.
Ebola virus ••• Zaire strain. Not intended as a substitute for medical intervention.
Echinococcus ••• Set includes Echinococcus granulosus and Echinococcus multilocularis. A type of tapeworm.
Echinostoma hortense ••• A trematode parasite.
Echovirus type 7
Echovirus type 9
Echovirus type 11
Echovirus type 30
E. coli, see Escherichia coli
Ehrlichia canis
Ehrlichia chaffeensis
Eikenella corrodens
Empedobacter brevis
Encephalotozoon cuniculi ••• Fungal organism.
Entamoeba histolytica
Enterobacter aerogenes
Enterobacter cloacae ••• subspecies cloacae
Enterobacter sakazakii, see Cronobacter sakazakii.
Enterobius vermicularis ••• Common name: human pinworm.
Enterococcus faecalis
Enterococcus faecium
Enterococcus gallinarum
Enterovirus 68 ••• Also known as Enterovirus D68 or EV68 or EVD68.
Enterovirus 69
Enterovirus 70
Enterovirus 71
Epidermophyton floccosum ••• Fungal organism.
Epstein-Barr virus, see Human herpesvirus 4.
Erythrovirus B19 ••• See Human parvovirus B19.
Escherichia coli (E. coli) ••• Includes items from numerous strains.
Eubacterium nodatum
Eurytrema pancreaticum ••• Common name: pancreatic fluke.
F
Fasciola gigantica ••• A species of liver fluke.
Fasciola hepatica ••• Common names: sheep liver fluke or common liver fluke.
Fasciolopsis buski ••• Common name: intestinal fluke.
Filifactor alocis
Finegoldia magna ••• Formerly known as Peptostreptococcus magnus.
Flavimonas oryzihabitans, see Pseudomonas oryzihabitans.
Francisella tularensis ••• Includes items from various subspecies and strains.
Fusarium solani ••• Fungal organism.
Fusobacterium necrophorum
Fusobacterium nucleatum
Fusobacterium varium
G
Galactomyces candidum ••• Also known as Geotrichum candidum. Fungal organism.
Gardnerella vaginalis ••• Formerly called Haemophilus vaginalis or Corynebacterium vaginalis.
Geotrichum candidum, see Galactomyces candidum.
Giardia lamblia ••• Also known as Giardia intestinalis.
Gnathostoma spinigerum ••• A nematode parasite.
Gongylonema pulchrum ••• Common name: gullet worm.
Gordonia bronchialis
Granulicatella adiacens
H
Haemonchus contortus ••• Common names: red stomach worm, barber pole worm.
Haemophilus ducreyi
Haemophilus influenzae
Haemophilus parainfluenzae
Haemophilus vaginalis, see Gardnerella vaginalis.
Hafnia alvei
Hantavirus ••• Also known as Hantaan virus.
Hathewaya histolytica ••• Previously known as Clostridium histolyticum.
Heartland virus ••• Also known as Heartland banadavirus.
Helicobacter hepaticus
Helicobacter pylori ••• Previously known as Campylobacter pylori.
Hendra virus
Hepatitis A virus
Hepatitis B virus
Hepatitis C virus
Hepatitis D (delta) virus
Hepatitis E virus
Hepatitis G virus ••• Also knnown as Hepatitis GB virus C.
Herpes simplex 1 virus, see Human herpesvirus 1.
Herpes simplex 2 virus, see Human herpesvirus 2.
HERV, see Human endogenous retrovirus.
Heyndrickxia oleronia ••• Formerly known as Bacillus oleronius.
Histoplasma capsulatum ••• Fungal organism.
HIV-1 (Human immunodeficiency virus 1)
HTLV-1 (Human T-cell lymphotropic virus type 1; also known as Human T-cell leukemia virus type 1)
HTLV-2 (Human T-cell lymphotropic virus type 2)
HTLV-3 (Human T-cell lymphotropic virus type 3)
Human endogenous retrovirus E
Human endogenous retrovirus HRES-1
Human endogenous retrovirus K ••• Strain capable of replication.
Human endogenous retrovirus W
Human foamy virus (also known as Human spumaretrovirus)
Human herpesvirus 1 (also known as Herpes simplex 1 virus)
Human herpesvirus 2 (also known as Herpes simplex 2 virus)
Human herpesvirus 3 (also known as Varicella zoster virus or Chickenpox virus)
Human herpesvirus 4 (also known as Epstein-Barr virus)
Human herpesvirus 5 (also known as Cytomegalovirus)
Human herpesvirus 6A
Human herpesvirus 6B
Human herpesvirus 7
Human herpesvirus 8 (also known as Kaposi's sarcoma virus)
Human immunodeficiency virus 1 (HIV-1)
Human mouse mammary tumor virus
Human orthopneumovirus, see Respiratory syncytial virus.
Human papillomavirus (HPV) type 1
Human papillomavirus (HPV) type 2
Human papillomavirus (HPV) type 3
Human papillomavirus (HPV) type 4
Human papillomavirus (HPV) type 5
Human papillomavirus (HPV) type 6
Human papillomavirus (HPV) type 7
Human papillomavirus (HPV) type 8
Human papillomavirus (HPV) type 9
Human papillomavirus (HPV) type 10
Human papillomavirus (HPV) type 11
Human papillomavirus (HPV) type 15
Human papillomavirus (HPV) type 16
Human papillomavirus (HPV) type 17
Human papillomavirus (HPV) type 18
Human papillomavirus (HPV) type 20
Human papillomavirus (HPV) type 24
Human papillomavirus (HPV) type 27
Human papillomavirus (HPV) type 28
Human papillomavirus (HPV) type 29
Human papillomavirus (HPV) type 31
Human papillomavirus (HPV) type 33
Human papillomavirus (HPV) type 35
Human papillomavirus (HPV) type 36
Human papillomavirus (HPV) type 38
Human papillomavirus (HPV) type 39
Human papillomavirus (HPV) type 40
Human papillomavirus (HPV) type 41
Human papillomavirus (HPV) type 43
Human papillomavirus (HPV) type 45
Human papillomavirus (HPV) type 47
Human papillomavirus (HPV) type 49
Human papillomavirus (HPV) type 50
Human papillomavirus (HPV) type 51
Human papillomavirus (HPV) type 52
Human papillomavirus (HPV) type 53
Human papillomavirus (HPV) type 54
Human papillomavirus (HPV) type 56
Human papillomavirus (HPV) type 58
Human papillomavirus (HPV) type 59
Human papillomavirus (HPV) type 62
Human papillomavirus (HPV) type 66
Human papillomavirus (HPV) type 88
Human papillomavirus (HPV) type 91
Human papillomavirus (HPV) type 95
Human parainfluenza virus types 1-4 ••• Types 1 & 3 are also known (respectively) as Human respirovirus type 1 and type 3; types 2 & 4 are also known (respectively) as Human rubulavirus type 2 and type 4.
Human parvovirus B19 ••• Also known as Erythrovirus B19.
Human respirovirus, see Human parainfluenza virus.
Human rubulavirus, see Human parainfluenza virus.
Human spumaretrovirus, see Human foamy virus.
Human T-cell lymphotropic virus type 1 (also known as Human T-cell leukemia virus type 1), see HTLV-1.
Human T-cell lymphotropic virus type 2, see HTLV-2.
Hymenolepis diminuta ••• Common name: rat tapeworm.
Hymenolepis nana ••• Common name: dwarf tapeworm.
I
Influenza A
Influenza A, “Swine” (2009)
Influenza B
J
Japanese encephalitis virus
JC virus
K
Kingella kingae
Klebsiella oxytoca
Klebsiella planticola
Klebsiella pneumoniae, subspecies pneumoniae
Kluyvera ascorbata
Kocuria kristinae
L
La Crosse virus
Lactobacillus iners
Legionella pneumophila
Leishmania braziliensis
Leishmania donovani
Leptospira ••• Includes Leptospira interrogans and Leptospira borgpetersenii species.
Lichtheimia hongkongensis ••• Also known as Lichtheimia ramosa, Absidia ramosa, or Mycocladus ramosus. Fungal organism.
Lichtheimia ramosa, see Lichtheimia hongkongensis.
Listeria monocytogenes
Ljungan virus, see Parechovirus B.
Loa loa ••• Common name, African eye worm.
Louping ill virus
M
Magnusiomyces capitatus ••• Fungal organism; also known as Dipodascus capitatus, Blastoschizomyces capitatus, Geotrichum capitatum, Blastoschizomyces pseudotrichosporon.
Malassezia furfur ••• Fungal organism.
Malassezia globosa ••• Fungal organism.
Malassezia restricta ••• Fungal organism.
Malassezia sympodialis ••• Fungal organism.
Mansonella ozzardi ••• A filarial nematode.
Mansonella perstans ••• A filarial nematode.
Marburg virus
Massilia timonae
Measles virus ••• Also known as Red measles virus or Rubeola virus; not the same pathogen as Rubella virus, the causative agent of German measles.
Merkel cell polyomavirus
MERS coronavirus, see Coronavirus MERS
Metagonimus yokogawai ••• A fluke parasite.
Metastrongylus ••• Includes Metastrongylus salmi & Metastrongylus pudentotectus; common name, pig lungworm.
Methanobrevibacter arboriphilus
Methanobrevibacter smithii
Methanosphaera stadtmanae
Meyerozyma guilliermondi ••• Also known as Candida guilliermondi, Pichia guilliermondi. Fungal organism.
Micrococcus luteus
Microfilaria general ••• Intended for situations in which the exact species is unknown.
Microsporum canis ••• Fungal organism.
Microsporum ferrugineum & Microsporum audouinii ••• Fungal organisms.
Mobiluncus curtisii
Molluscum contagiosum virus
Moraxella catarrhalis
Morganella morganii
Mortierella verticillata, see Podila verticillata.
Mucor circinelloides ••• Fungal organism.
Mumps virus
Mycobacterium abscessus
Mycobacterium avium
Mycobacterium avium subspecies hominissuis, see Mycobacterium hominissus.
Mycobacterium avium subspecies paratuberculosis, see Mycobacterium paratuberculosis.
Mycobacterium bovis
Mycobacterium fortuitum
Mycobacterium hominissus ••• Also known as Mycobacterium avium subspecies hominissuis.
Mycobacterium intracellulare
Mycobacterium kansasii
Mycobacterium lentiflavum
Mycobacterium leprae
Mycobacterium marinum
Mycobacterium paratuberculosis ••• Also known as Mycobacterium avium subspecies paratuberculosis.
Mycobacterium tuberculosis
Mycolicibacterium mucogenicum
Mycoplasma arthritidis
Mycoplasma fermentans
Mycoplasma genitalium
Mycoplasma hominis
Mycoplasma penetrans
Mycoplasma pirum
Mycoplasma pneumoniae
Mycoplasma salivarium
N
Nannizzia gypsea, see Arthroderma gypseum.
Nannizzia nana, see Arthroderma obtusum.
Necator americanus, see Ancylostoma duodenale
Neisseria gonorrhoeae
Neisseria mucosa
Neorickettsia sennetsu
Nocardia cyriacigeorgica ••• Formerly classified as Nocardia asteroides.
Nocardia farcinica
Norovirus / Norwalk virus ••• These closely-related viruses are in one set.
Novosphingobium aromaticivorans
O
Ochrobactrum anthropi
Olsenella uli
Onchocerca volvulus ••• A filarial nematode.
Opisthorchis felineus ••• Common name: cat liver fluke.
Opisthorchis viverrini ••• A species of liver fluke endemic in southeast Asia.
Orientia tsutsugamushi ••• Formerly known as Theileria tsutsugamushi, Rickettsia tsutsugamushi, Rickettsia orientalis, or Rickettsia akamushi.
Orientobilharzia turkestanicum, see Schistosoma turkestanicum.
P
Pantoea agglomerans
Pantoea ananatis
Parachlamydia acanthamoeba
Paracoccidioides brasiliensis ••• Fungal organism.
Paragonimus westermani ••• Common name: Oriental lung fluke.
Parainfluenza virus, see Human parainfluenza virus.
Parechovirus B (also known as Ljungan virus)
Parvimonas micra ••• Formerly known as Peptostreptococcus micros.
Parvovirus B19, human ••• See Human parvovirus B19.
Pasteurella multocida
Pediculus humanus capitus ••• Common name: human head louse.
Penicillium chrysogenum ••• Formerly known as Penicillium notatum. Fungal organism.
Penicillium citrinum ••• Fungal organism.
Penicillium digitatum ••• Fungal organism.
Penicillium marneffei ••• Fungal organism.
Penicillium notatum, see Penicillium chrysogenum.
Peptostreptococcus anaerobius
Peptostreptococcus magnus, see Finegoldia magna.
Peptostreptococcus micros, see Parvimonas micros.
Peptostreptococcus stomatis
Pichia guilliermondi, see Meyerozyma guilliermondi. Fungal organism.
Pichia kudriavzevii, see Candida krusei. Fungal organism.
Photorhabdus asymbiotica
Plasmodium falciparum
Plasmodium vivax
Pneumocystis jiroveci ••• Formerly known as Pneumocystis carinii. Fungal organism.
Podila verticillata ••• Fungal organism.
Poliovirus ••• Includes types 1, 2, and 3.
Porphyromonas endodontalis
Porphyromonas gingivalis
Powassan virus
Prevotella bivia
Prevotella buccalis ••• also known as Bacteroides buccalis.
Prevotella copri
Prevotella denticola
Prevotella intermedia
Prevotella melaninogenica
Prevotella nigrescens
Prevotella oralis
Prevotella oris
Prevotella tannerae
Propionibacterium acnes ••• also known as Cutibacterium acnes.
Propionibacterium propionicum
Proteus mirabilis
Proteus vulgaris
Protochlamydia amoebophila
Providencia alcalifaciens
Providencia rettgeri
Providencia stuartii
Pseudomonas aeruginosa
Pseudomonas fluorescens
Pseudomonas luteola
Pseudomonas mallei, see Burkholderia mallei.
Pseudomonas oryzihabitans
Pseudomonas putida
Pseudomonas stutzeri
Pythium insidiosum ••• Parasitic algae-like oomycetic pathogen.
R
Ralstonia pickettii $15.00
Respiratory syncytial virus ••• Also known as Human orthopneumovirus.
Rhinovirus
Rhizopus oryzae ••• Fungal organism.
Rhodococcus equi ••• Formerly called Corynebacterium equi.
Rickettsia africae
Rickettsia akari
Rickettsia coronii ••• Spotted fever pathogen.
Rickettsia felis ••• Spotted fever pathogen; carried by fleas.
Rickettsia helvetica
Rickettsia prowazekii
Rickettsia rickettsii
Rickettsia typhi
Rift Valley fever virus
Ross River Virus
Rotavirus type A (human) ••• This type primarily infects children.
Rothia dentocariosa
Rubella virus ••• Also known as German measles virus; not the same pathogen as measles virus, the causative agent of red measles or rubeola).
Ruminococcus gnavus
S
Salmonella enteritidis ••• A subspecies associated with food poisoning.
Salmonella infantis
Salmonella typhi & paratyphi A ••• A subspecies associated with typhoid fever.
Salmonella typhimurium ••• A subspecies associated with food poisoning.
Sapovirus
Sarcoptes scabiei, type hominis ••• Also known as human scabies mite.
Schistosoma haematobium ••• Common name: human blood fluke.
Schistosoma indicum & Schistosoma spindale
Schistosoma japonicum ••• Common name: Oriental blood fluke.
Schistosoma mansoni ••• Common name: human blood fluke.
Schistosoma margrebowiei ••• A blood fluke endemic in Africa.
Schistosoma mekongi
Schistosoma spindale, see Schistosoma indicum.
Schistosoma turkestanicum ••• Also known as Orientobilharzia turkestanicum.
Serratia liquefaciens
Serratia marcescens
Serratia plymuthica
Shewanella algae
Shewanella oneidensis
Shigella ••• Includes four species of Shigella: S. boydii, S. dysenteriae, S. flexneri, & S. sonnei.
Shingles virus, see Human herpesvirus 3
Simian parainfluenza virus 5
Simian virus 40 (SV40)
Simkania negevensis ••• A Chlamydia family organism.
Solobacterium moorei
Spirometra erinaceieuropaei ••• A species of tapeworm.
Spiroplasma mirum
Sporothrix schenckii ••• Fungal organism.
Spumaretrovirus, see Human foamy virus.
Stachybotrys chartarum ••• Mold organism.
Stachybotrys chlorohalonata ••• Mold organism.
Staphylococcus aureus ••• Includes MRSA strains.
Staphylococcus epidermidis
Staphylococcus haemolyticus
Staphylococcus intermedius
Staphylococcus lugdunensis
Staphylococcus saprophyticus
Staphylococcus schleiferi
Staphylococcus warneri
Stenotrophomonas maltophilia
St. Louis encephalitis virus
Streptobacillus moniliformis
Streptococcus agalactiae
Streptococcus anginosus
Streptococcus constellatus subspecies pharyngitis
Streptococcus dysgalactiae subspecies equisimilis
Streptococcus equi subspecies zooepidemicus
Streptococcus gallolyticus
Streptococcus gordonii
Streptococcus intermedius
Streptococcus milleri
Streptococcus mitis
Streptococcus mutans
Streptococcus oralis
Streptococcus parasanguinis
Streptococcus pneumoniae
Streptococcus porcinus
Streptococcus pyogenes
Streptococcus salivarius
Streptococcus sanguinis
Streptococcus sobrinus
Streptococcus suis
Streptococcus vestibularis
Strongyloides fuelleborni ••• Common name: threadworm.
Strongyloides stercoralis ••• Common name: threadworm.
Succinivibrio dextrinosolvens
T
Taenia crassiceps ••• Common name: tapeworm; most common in canids.
Taenia general ••• Includes Taenia asiatica, Taenia multiceps, & Taenia saginata (common name for these species: beef tapeworm).
Taenia hydatigena ••• Alternate names: Cysticercus tenuicolis, Cysticercus tenucollis; common names: tapeworm, thin-necked bladderworm.
Taenia saginata ••• Common name: beef tapeworm.
Taenia serialis ••• Common name: canid tapeworm.
Taenia solium ••• Common name: pork tapeworm.
Taenia taeniaeformis ••• Alternate or old names: Hydatigera taeniaeformis, Taenia crassicollis, Cysticercus fasciolaris (larval form), Hydatigera himalayotaenia.
Tannerella forsythensis (forsythia) ••• Old name: Bacteroides forsythus.
Thelazia callipaeda ••• Common name: Oriental eyeworm.
Tick-borne encephalitis virus ••• Also known as FSME virus ("Fruhsommer Meningoenzephalitis Virus"), or “Early summer meningoencephalitis virus”.
Toxocara canis & Toxocara cati ••• Common names: dog roundworm and cat roundworm; Toxocara cati is sometimes called Toxocara felis.
Toxocara malaysiensis ••• Common name, feline roundworm.
Toxoplasma gondii
Treponema denticola
Treponema pallidum
Treponema vincentii ••• Formerly known as Borrelia vincentii.
Trichinella spiralis
Trichobilharzia regenti ••• A species of schistosome.
Trichomonas vaginalis
Trichophyton ••• Includes Trichophyton mentagrophytes and Trichophyton rubrum. Fungal organisms.
Trichophyton schoenleinii ••• Fungal organism.
Trichophyton violaceum ••• Fungal organism.
Trichosporon asahii ••• Fungal organism.
Trichosporon inkin ••• Fungal organism.
Trichostrongylus ••• Includes Trichostrongylus axei & Trichostrongylus vitrinus. Common name, stomach/intestinal hairworm (nematode, roundworm).
Trichuris trichiura ••• Common name: human whipworm.
Tropheryma whipplei
Trueperella pyogenes
Trypanosoma brucei gambiense
Trypanosoma cruzi
U
Ureaplasma parvum
Ureaplasma urealyticum
V
Varicella zoster virus, see Human herpesvirus 3.
Variola virus ••• Common name, smallpox virus.
Veillonella parvula
Venezuelan equine encephalitis virus
Vibrio parahaemolyticus
Vibrio vulnificus
W
Waddlia chondrophila ••• A Chlamydia family organism.
West Nile virus
Western equine encephalitis virus
Wolbachia endosymbiont of Brugia malayi
Wolbachia endosymbiont of Onchocerca volvulus
Wolbachia endosymbiont of Wuchereria bancrofti
Wuchereria bancrofti
X
XMRV ••• Full name, Xenotropic MuLV-related virus (MuLV = murine leukemia virus).
Y
Yellow fever virus
Yersinia enterocolitica
Z
Zika virus